Ogg FLAC
Lossless FLAC audio wrapped in Ogg — useful when you need a richer transport layer.
Pro Audio Converter can convert audio files to and from Ogg FLAC (.oga).
You can think of an audio codec as having two layers. The inside layer is the raw compressed data, and the outside layer is the "container" or "transport layer" that splits and arranges the compressed data into pieces so it can be seeked through, edited, and so on.
"Native" FLAC is the compressed FLAC data stored in a very minimalist container, designed to be very efficient at storing single audio streams.
Ogg FLAC is the compressed FLAC data stored in an Ogg container. Ogg is a much more powerful transport layer that enables mixing several kinds of different streams (audio, data, metadata, etc). The overhead is slightly higher than with native FLAC.
If all you are doing is compressing audio to be played back later, native FLAC will do everything you need, is more widely supported, and will yield smaller files. If you plan to edit the compressed audio, or want to multiplex the audio with video later in an Ogg container, Ogg FLAC is the better choice.